| # | Title | Writer | Original Broadcast Date (US) |
| Season 1 | |||
| 1 | Transform and Roll Out, Part One | Marty Isenberg | 26/12/2007 |
| 2 | Transform and Roll Out, Part Two | Marty Isenberg | 26/12/2007 |
| 3 | Transform and Roll Out, Part Three | Marty Isenberg | 26/12/2007 |
| 4 | Home Is Where the Spark Is | Michael Ryan | 05/01/2008 |
| 5 | Total Meltdown | Rich Fogel | 19/01/2008 |
| 6 | Blast from the Past | Kevin Hopps | 12/01/2008 |
| 7 | The Thrill of the Hunt | Andrew Robinson | 19/01/2008 |
| 8 | Nanosec | Marty Isenberg | 26/01/2008 |
| 9 | Along Came a Spider | Marty Isenberg | 16/02/2008 |
| 10 | Sound and Fury | Henry Gilroy | 23/02/2008 |
| 11 | Lost and Found | Rich Fogel | 01/03/2008 |
| 12 | Survival of the Fittest | Steven Granat | 08/03/2008 |
| 13 | Headmaster | Michael Ryan | 15/03/2008 |
| 14 | Nature Calls | Todd Casey | 22/03/2008 |
| 15 | Megatron Rising, Part 1 | Marsha Griffin | 29/03/2008 |
| 16 | Megatron Rising, Part 2 | Marty Isenberg | 05/04/2008 |
| Season 2 | |||
| 17 | The Elite Guard | Rich Fogel | 12/04/2008 |
| 18 | The Return of the Headmaster | Michael Ryan | 19/04/2008 |
| 19 | Mission Accomplished | Marsha Griffin | 26/04/2008 |
| 20 | Garbage In, Garbage Out | Marty Isenberg | 03/05/2008 |
| 21 | Velocity | Len Uhley | 10/05/2008 |
| 22 | Rise of the Constructicons | Stan Berkowitz | 17/05/2008 |
| 23 | A Fistful of Energon | Andrew Robinson | 24/05/2008 |
| 24 | SUV: Society of Ultimate Villainy | Dean Stefan | 31/05/2008 |
| 25 | Autoboot Camp | Michael Ryan | 03/06/2008 |
| 26 | Black Friday | Rich Fogel | 04/06/2008 |
| 27 | Sari, No One's Home | Todd Casey | 05/06/2008 |
| 28 | A Bridge Too Close, Part 1 | Marsha Griffin | 28/06/2008 |
| 29 | A Bridge Too Close, Part 2 | Marty Isenberg | 28/06/2008 |
| Season 3 | |||
| 30 | TransWarped, Part 1 | Marty Isenberg | 14/03/2009 |
| 31 | TransWarped, Part 2 | Michael Ryan | 14/03/2009 |
| 32 | TransWarped, Part 3 | Marsha Griffin | 14/03/2009 |
| 33 | Three's a Crowd | Rich Fogel | 21/03/2009 |
| 34 | Where Is Thy Sting? | Todd Casey | 28/03/2009 |
| 35 | Five Servos of Doom | Andrew Robinson | 04/04/2009 |
| 36 | Predacons Rising | Larry DiTillio & Bob Forward | 11/04/2009 |
| 37 | Human Error, Part 1 | Henry Gilroy | 18/04/2009 |
| 38 | Human Error, Part 2 | Tom Pugsley | 25/04/2009 |
| 39 | Decepticon Air | Michael Ryan | 02/05/2009 |
| 40 | This Is Why I Hate Machines | Rob Hoegee | 09/05/2009 |
| 41 | Endgame, Part 1 | Rich Fogel | 16/05/2009 |
| 42 | Endgame, Part 2 | Marsha Griffin | 23/05/2009 |
