| # | Title | Writer | Original Broadcast Date (US) |
| Season 1 | |||
| 1 | Beast Wars, Part 1 | Bob Forward | 16/09/1996 |
| 2 | Beast Wars, Part 1 | Bob Forward | 17/09/1996 |
| 3 | The Web | Larry DiTillio | 18/09/1996 |
| 4 | Equal Measures | Greg Johnson | 23/09/1996 |
| 5 | Chain of Command | Jesse Winfield | 24/09/1996 |
| 6 | Power Surge | Larry DiTillio | 25/09/1996 |
| 7 | Fallen Comrades | Bob Forward | 30/09/1996 |
| 8 | Double Jeopardy | Jesse Winfield | 07/10/1996 |
| 9 | A Better Mousetrap | Chris Weber & Karen Willson | 08/10/1996 |
| 10 | Gorilla Warfare | Greg Johnson | 14/10/1996 |
| 11 | The Probe | Craig Miller & Marv Wolfman | 15/10/1996 |
| 12 | Victory | Wendy Reardon | 01/11/1996 |
| 13 | Dark Designs | Ian Weir | 04/11/1996 |
| 14 | Double Dinobot | Rowby Goren | 05/11/1996 |
| 15 | The Spark | Larry DiTillio | 11/11/1996 |
| 16 | The Trigger, Part 1 | Bob Forward | 18/11/1996 |
| 17 | The Trigger, Part 2 | Bob Forward | 19/11/1996 |
| 18 | Spider's Game | Larry DiTillio | 06/01/1997 |
| 19 | Call of the Wild | Bob Forward | 07/01/1997 |
| 20 | Dark Voyage | Samuel Warren Joseph | 27/01/1997 |
| 21 | Possession | Ian Weir | 03/02/1997 |
| 22 | The Low Road | Bob Forward | 10/02/1997 |
| 23 | Law of the Jungle | Mark Leiren-Young | 17/02/1997 |
| 24 | Before the Storm | Larry DiTillio & Bob Forward | 21/02/1997 |
| 25 | Other Voices, Part 1 | Larry DiTillio & Bob Forward | 31/03/1997 |
| 26 | Other Voices, Part 2 | Larry DiTillio | 01/04/1997 |
| Season 2 | |||
| 27 | Aftermath | Larry DiTillio | 26/10/1997 |
| 28 | Coming of the Fuzors, Part 1 | Bob Forward | 02/11/1997 |
| 29 | Coming of the Fuzors, Part 2 | Bob Forward | 09/11/1997 |
| 30 | Tangled Web | Len Wein | 16/11/1997 |
| 31 | Maximal, No More | Patrick Barry | 23/11/1997 |
| 32 | Other Visits, Part 1 | Larry DiTillio | 08/02/1998 |
| 33 | Other Visits, Part 2 | Larry DiTillio | 15/02/1998 |
| 34 | Bad Spark | Greg Johnson | 22/02/1998 |
| 35 | Code of Hero | Ian Weir | 09/03/1998 |
| 36 | Transmutate | Christy Marx | 10/03/1998 |
| 37 | The Agenda, Part 1 | Bob Forward | 11/03/1998 |
| 38 | The Agenda, Part 2 | Bob Forward | 12/03/1998 |
| 39 | The Agenda, Part 3 | Bob Forward | 12/03/1998 |
| Season 3 | |||
| 40 | Optimal Situation | Bob Forward | 24/10/1998 |
| 41 | Deep Metal | Larry DiTillio | 01/11/1998 |
| 42 | Changing of the Guard | Evan Somers | 08/11/1998 |
| 43 | Cutting Edge | Ian Weir | 15/11/1998 |
| 44 | Feral Scream, Part 1 | Greg Johnson | 31/01/1999 |
| 45 | Feral Scream, Part 2 | Jules Dennis | 07/02/1999 |
| 46 | Proving Grounds | Arthur Sellers | 14/02/1999 |
| 47 | Go With the Flow | Bob Forward | 18/02/1999 |
| 48 | Crossing the Rubicon | D.C. Fontana | 22/02/1999 |
| 49 | Master Blaster | Eric Torin | 01/03/1999 |
| 50 | Other Victories | Larry DiTillio | 05/05/1999 |
| 51 | Nemesis, Part 1 | Bob Forward | 06/05/1999 |
| 52 | Nemesis, Part 2 | Simon Furman | 07/05/1999 |
