| # | Title | Writer | Original Broadcast Date (US) |
| 1 | Battle Protocol! | Tom Wyner | 08/09/2001 |
| 2 | An Explosive Situation | Tom Wyner | 10/09/2001 |
| 3 | Bullet Train to the Rescue | Steve Kramer | 12/09/2001 |
| 4 | Spychangers to the Rescue | Richard Epcar | 13/09/2001 |
| 5 | The Hunt for Black Pyramid | Marc Handler | 14/09/2001 |
| 6 | The Secret of the Ruins | Tom Wyner | 11/10/2001 |
| 7 | Sideburn's Obsession | Richard Epcar | 15/09/2001 |
| 8 | Secret Weapon: D-5 | Marc Handler | 17/09/2001 |
| 9 | Mirage's Betrayal | Richard Epcar | 18/09/2001 |
| 10 | Skid Z's Choice | Tom Wyner | 19/09/2001 |
| 11 | Tow-Line Goes Haywire | Matthew V. Lewis | 20/09/2001 |
| 12 | The Ultimate Robot Warrior | Richard Epcar | 21/09/2001 |
| 13 | Hope for the Future | Tom Wyner | 26/10/2001 |
| 14 | The Decepticons | Tom Wyner | 22/09/2001 |
| 15 | Commandos | Marc Handler | 24/09/2001 |
| 16 | Volcano | Tom Wyner | 25/09/2001 |
| 17 | Attack from Outer Space | Matthew V. Lewis | 12/01/2002 |
| 18 | The Test | Tom Wyner | 26/09/2001 |
| 19 | The Fish Test | Marc Handler | 27/09/2001 |
| 20 | Wedge's Short Fuse | Richard Epcar | 28/09/2001 |
| 21 | Landfill | Richard Epcar | 22/06/2002 |
| 22 | Sky-Byte Saves the Day | Matthew V. Lewis | 23/06/2002 |
| 23 | A Test of Metal | Richard Epcar | 29/09/2001 |
| 24 | Ultra Magnus | Tom Wyner | 06/10/2001 |
| 25 | Ultra Magnus: Forced Fusion! | Matthew V. Lewis | 13/10/2001 |
| 26 | Lessons of the Past | Tom Wyner | 14/12/2001 |
| 27 | The Two Faces of Ultra Magnus | Michael McConnohie | 20/10/2001 |
| 28 | Power to Burn! | Tom Wyner | 19/10/2001 |
| 29 | Fortress Maximus | Richard Epcar | 27/10/2001 |
| 30 | Koji Gets His Wish | Richard Epcar | 03/11/2001 |
| 31 | A Friendly Contest | Matthew V. Lewis | 10/11/2001 |
| 32 | Peril from the Past | Michael McConnohie | 17/11/2001 |
| 33 | Maximus Emerges | Tom Wyner | 16/02/2002 |
| 34 | The Human Element | Tom Wyner | 23/02/2002 |
| 35 | Mystery of the Ultra Magnus | Tom Wyner | 30/03/2002 |
| 36 | Mistaken Identity | Michael McConnohie | 02/03/2002 |
| 37 | Surprise Attack! | Tom Wyner | 09/03/2002 |
| 38 | Galvatron's Revenge | Richard Epcar | 16/03/2002 |
| 39 | The Final Battle | Tom Wyner | 23/03/2002 |
